Summarize results

The summarize subcommand outputs an HTML file with a summary of the analysis.

Running the summarize subcommand

To run the summarize subcommand with the truncate data, run the following command.

$ java -jar Diachromatic.jar summarize \
    -t outdir/prefix.truncation.stats.txt \
    -a outdir/prefix.align.stats.txt \
    -c outdir/prefix.count.stats.txt \
    -x prefix \
    -o outdir

Available arguments:

Short option	Long option	Example	Required	Description	Default
-o	--out-dir	outdir	yes	Directory for output of the summarize subcommand.	results
-x	--out-prefix	prefix	yes	Prefix for generated file in output directory.	prefix
-t	--truncate	prefix.truncation.stats.txt	yes	Path to truncate statistics file.	null
-a	--align	prefix.align.stats.txt	yes	Path to align statistics file.	null
-c	--count	prefix.count.stats.txt	yes	Path to count statistics file.	null

Output files

This will generate an HTML file called outdir/prefix.summary.stats.html.